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science/{,py-}phonopy: update 3.5.1 → 4.0.0

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This commit is contained in:
Yuri Victorovich
2026-05-17 01:44:06 -07:00
parent 3a72acf034
commit a1ddfdcfbc
6 changed files with 42 additions and 35 deletions
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science/phonopy/Makefile
+1 -1
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@@ -1,6 +1,6 @@
PORTNAME= phonopy
DISTVERSIONPREFIX= v
DISTVERSION= 3.5.1
DISTVERSION= 4.0.0
CATEGORIES= science python
MAINTAINER= yuri@FreeBSD.org
science/phonopy/distinfo
+3 -3
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@@ -1,3 +1,3 @@
TIMESTAMP = 1777008346
SHA256 (phonopy-phonopy-v3.5.1_GH0.tar.gz) = 2aeaf0e363054c61e12b4948207cec5ddd70a50b68c9520fe813fe1e65439e2a
SIZE (phonopy-phonopy-v3.5.1_GH0.tar.gz) = 8136506
TIMESTAMP = 1779007077
SHA256 (phonopy-phonopy-v4.0.0_GH0.tar.gz) = 8eb4f3dbe47c6061c3e1a9974598ec94c8d0674a16d87ab2b9468be7d0a287f2
SIZE (phonopy-phonopy-v4.0.0_GH0.tar.gz) = 8274065
science/py-phonopy/Makefile
+8 -14
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@@ -1,6 +1,5 @@
PORTNAME= phonopy
DISTVERSION= 3.5.1
PORTREVISION= 1
DISTVERSION= 4.0.0
CATEGORIES= science python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -15,19 +14,19 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= cmake:devel/cmake-core \
${PYTHON_PKGNAMEPREFIX}nanobind>0:devel/py-nanobind@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}numpy>=1.17:math/py-numpy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} \
${PY_SETUPTOOLS} \
${PYTHON_PKGNAMEPREFIX}setuptools-scm>0:devel/py-setuptools-scm@${PY_FLAVOR}
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}h5py>=3.0:science/py-h5py@${PY_FLAVOR} \
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>=3.0:science/py-h5py@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.2:math/py-matplotlib@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}spglib>=2.3:science/py-spglib@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}symfc>=1.1.6:science/py-symfc@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pyyaml>=5.3:devel/py-pyyaml@${PY_FLAVOR}
${PYTHON_PKGNAMEPREFIX}numpy>=1.17:math/py-numpy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pyyaml>=5.3:devel/py-pyyaml@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}spglib>=2.5:science/py-spglib@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}symfc>=1.7:science/py-symfc@${PY_FLAVOR}
USES= python
USE_PYTHON= pep517 cython autoplist pytest
USE_PYTHON= pep517 autoplist pytest
TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
TEST_WRKSRC= ${WRKSRC}/test
@@ -35,9 +34,4 @@ TEST_WRKSRC= ${WRKSRC}/test
post-install:
@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/phonopy/_phonopy${PYTHON_TAG}.so
# tests as of 3.5.1:
# Results (64.10s (0:01:04)):
# 880 passed
# 22 skipped
.include <bsd.port.mk>
science/py-phonopy/distinfo
+3 -3
View File
@@ -1,3 +1,3 @@
TIMESTAMP = 1777015315
SHA256 (phonopy-3.5.1.tar.gz) = 37869c383d0b1fa1355f17a1bb3599479406530d730791d71dc16186848db196
SIZE (phonopy-3.5.1.tar.gz) = 5128062
TIMESTAMP = 1779007076
SHA256 (phonopy-4.0.0.tar.gz) = 650907380f4dd6c9ac6156651231c25d4d814cb4eca0bf06ec62b2263a8115a2
SIZE (phonopy-4.0.0.tar.gz) = 5244720
science/py-phonopy/files/patch-pyproject.toml
+17 -3
View File
@@ -1,9 +1,23 @@
--- pyproject.toml.orig 2026-03-01 18:46:34 UTC
-- Relax dependency constraints that break the ports tree.
-- Drop the nanobind upper cap and remove phonors hard runtime dependency
-- until a corresponding FreeBSD port is available.
-- Upstream: not yet submitted
--- pyproject.toml.orig 2026-05-17 08:22:00 UTC
+++ pyproject.toml
@@ -1,5 +1,5 @@
@@ -1,4 +1,4 @@
[build-system]
-requires = ["scikit-build-core", "nanobind<2.10.0", "numpy"]
+requires = ["scikit-build-core", "nanobind", "numpy"]
build-backend = "scikit_build_core.build"
[project]
@@ -13,8 +13,7 @@
dependencies = [
"numpy>=1.17.0",
"PyYAML>=5.3",
"matplotlib>=2.2.2",
"h5py>=3.0",
"spglib>=2.5",
"symfc>=1.7",
- "phonors"
]
science/py-phonopy/files/patch-test_conftest.py
+10 -11
View File
@@ -1,11 +1,12 @@
-- Fix test crash by setting matplotlib to use non-interactive Agg backend.
-- This prevents segmentation faults when matplotlib tries to use GTK4 backend
-- in a headless FreeBSD environment during test execution.
-- See: https://github.com/phonopy/phonopy/issues/???
-- Force non-interactive matplotlib backend in tests.
-- Prevents crashes in headless FreeBSD test environments that otherwise select
-- a GUI backend.
-- Upstream: not yet submitted
--- test/conftest.py.orig 2026-04-24 07:29:40 UTC
--- test/conftest.py.orig 2022-11-09 12:37:21 UTC
+++ test/conftest.py
@@ -5,12 +5,15 @@ from collections.abc import Callable
@@ -4,11 +4,14 @@
import pathlib
from collections.abc import Callable
@@ -14,10 +15,8 @@
import pytest
import phonopy
from phonopy import Phonopy
from phonopy.structure.atoms import PhonopyAtoms
+
+matplotlib.use("Agg")
cwd = pathlib.Path(__file__).parent
from phonopy import Phonopy
from phonopy.interface.phonopy_yaml import read_cell_yaml
from phonopy.structure.atoms import PhonopyAtoms