FreeBSD/ports
1
0
Fork 0
mirror of https://git.freebsd.org/ports.git synced 2026-06-02 11:08:52 +00:00
Code Issues Projects Releases Wiki Activity
Files
2022Q3
ports/science
T
History
Yuri Victorovich 139c2db343 science/yoda: Update 1.9.4 -> 1.9.6
2022-08-23 20:45:14 -07:00
..
2d-rewriter
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
abinit
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
afni
science/afni: update to 22.1.14
2022-06-28 07:22:58 +02:00
agrum
science/agrum: Update 1.1.0 -> 1.1.1
2022-06-11 13:29:59 -07:00
aircraft-datcom
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
ALPSCore
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
antioch
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
apbs
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
ascent
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
atompaw
science/atompaw: Update 4.2.0.0 -> 4.2.0.1
2022-06-13 20:26:14 -07:00
avogadro2
science/avogadro2: Update 1.94.0 -> 1.95.1
2022-02-05 01:44:22 -08:00
avogadrolibs
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
axom
science/axom: Broken on armv7
2022-08-07 20:56:55 -07:00
bagel
science/bagel: Update 1.2.2 -> 1.2.2-132
2022-06-23 00:39:22 -07:00
bddsolve
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
berkeleygw
science/berkeleygw: Update 2.0.0 -> 3.0.1
2022-05-20 22:25:01 -07:00
bodr
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
buddy
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
cantera
science/cantera: Minor simplification
2022-06-29 01:21:31 -07:00
cdcl
Deorbit RESTRICTED && NO_CDROM, part two.
2021-05-06 13:47:48 +02:00
cdf
*: Clean up some things
2022-01-17 14:20:25 +01:00
cdk
science/cdk: Update 2.3 -> 2.7.1
2022-06-03 09:49:16 -07:00
cdo
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
cgnslib
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
cgribex
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
checkmol
lang/fpc: Fix build issues building some fpc based apps
2022-06-20 20:17:20 -05:00
chemical-mime-data
textproc/libxml2: bump all LIB_DEPENDS consumers
2022-04-10 15:11:41 -04:00
chemicalfun
science/chemicalfun: New port: C++ library for working with chemical reactions and formulas
2022-01-18 10:42:45 -08:00
chemps2
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
chemtool
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
chemtool-devel
science/chemtool-devel: Fix build on FreeBSD 13.1R and 14
2022-08-11 14:32:55 +01:00
chimes-calculator
science/chimes-calculator: New port: Chebyshev Interaction Model for Efficient Simulation
2022-01-18 23:05:13 -08:00
chrono
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
clhep
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
clipper
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
code_saturne
science/code_saturne: upgrade to 7.1.1
2022-04-26 22:46:44 +02:00
colt
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
conduit
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
coordgenlibs
science/coordgenlibs: Update 2.0.3 -> 3.0.0
2021-09-09 13:00:09 -07:00
cp2k
science/cp2k: Broken on systems where OpenMP isn't enabled
2022-07-24 19:06:32 -07:00
cp2k-data
science/cp2k-data: Update 7.1.0 -> 9.1.0
2022-05-23 18:34:17 -07:00
crf++
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
csvtk
*/*: Bump port revisons after lang/go{117,118} update
2022-06-07 16:56:10 -05:00
dakota
science/dakota: Fix LIB_DEPENDS after science/szip removal
2022-06-17 03:57:52 +08:00
dalton
Regenerate all distfiles using gitlab as source.
2021-04-09 20:44:23 +02:00
dcl
Deorbit RESTRICTED && NO_CDROM, part two.
2021-05-06 13:47:48 +02:00
devisor
all: Remove all other $FreeBSD keywords.
2021-04-06 16:31:13 +02:00
dftbplus
science/dftbplus: Update 21.2 -> 22.1
2022-05-25 23:52:58 -07:00
dftd4
science/dftd4: Update 3.3.0 -> 3.4.0
2022-04-30 12:48:30 -07:00
dkh
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
dlib-cpp
science/dlib-cpp: remove the patch that is now committed upstream and breaks the build on powerpc64le
2021-04-11 22:45:40 +00:00
drawxtl
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
dvc
Unbreak ports after devel/py-gitpython's PORTNAME change
2021-04-29 13:53:44 -04:00
dynare
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
eccodes
science/eccodes: Update to 2.26.0
2022-06-03 17:00:25 +08:00
elk
science/elk: Update 8.4.6 -> 8.4.21
2022-06-05 13:21:25 -07:00
elmerfem
science/elmerfem: Fix bug that build selected arbitrary Python versions
2022-07-21 10:24:17 -07:00
epte
*: Return culot@'s ports to the pool (and perl@) after safekeeping his bit.
2021-09-06 23:13:27 +02:00
erd
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
ergo
Fix CONFLICTS entries of multiple ports
2022-01-10 16:15:39 +01:00
erkale
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
erkale-pseudopotentials
science/erkale{,-pseudopotentials}: Update g20200426 -> g20220405
2022-05-24 12:51:17 -07:00
fastcap
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
fasthenry
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
fastjet
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
fisicalab
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
fleur
textproc/libxml2: bump all LIB_DEPENDS consumers
2022-04-10 15:11:41 -04:00
frontistr
science/frontistr adding FrontISTR
2021-04-26 12:17:38 +02:00
fsom
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
fvcom
science/netcdf-fortran: Update to 4.5.4
2022-03-08 02:10:59 +08:00
fvcom-mpi
*: Clean up some things
2021-10-12 17:01:38 +02:00
gabedit
science/gabedit: Improve BROKEN lines and options
2022-07-20 12:27:24 -07:00
gamess-us
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
gbtolib
science/gbtolib: Broken on systems where OpenMP isn't enabled
2022-07-30 00:35:18 -07:00
gchemutils
textproc/libxml2: bump all LIB_DEPENDS consumers
2022-04-10 15:11:41 -04:00
gdma
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
getdp
devel/cmake: Update to 3.23.0
2022-05-16 08:49:43 +02:00
ghemical
science/ghemical: Fix path to mopac port
2022-06-19 09:02:23 -07:00
ghmm
textproc/libxml2: bump all LIB_DEPENDS consumers
2022-04-10 15:11:41 -04:00
gnudatalanguage
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
gpaw-setups
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
gramps
science/gramps: remove option for expired py-bsddb3
2022-07-02 11:31:15 +02:00
grib_api
graphics/jasper: Bump PORTREVISION of dependent ports for shlib change after cdcedd316d
2022-04-17 04:55:37 +08:00
gromacs
science/gromacs: Update 2022.1 -> 2022.2
2022-06-17 10:05:29 -07:00
gsmc
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
gtamsanalyzer
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
h5utils
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
h5z-zfp
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
harminv
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
hdf
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
hdf5
science/hdf5: Sort PLIST
2022-06-16 23:27:43 +08:00
hdf5-18
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
healpix
astro/cfitsio: Update to 4.0.0
2022-02-28 23:06:56 +08:00
helfem
science/helfem: Fix build with clang-14
2022-06-24 12:29:39 -07:00
hepmc3
science/hepmc3: Update 3.2.4 -> 3.2.5
2022-05-12 11:57:53 -07:00
highfive
science/highfive: Update 2.4.0 -> 2.4.1
2022-05-12 11:57:51 -07:00
hypre
science/hypre: Update 2.24.0 -> 2.25.0
2022-06-16 21:03:50 -07:00
iboview
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
InsightToolkit
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
isaac-cfd
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
jdftx
science/jdftx: Update 1.6.0 -> 1.7.0
2022-01-29 09:24:02 -08:00
jmol
science/jmol: Update 14.32.59 -> 14.32.61
2022-06-25 19:22:56 -07:00
jstrack
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
kalzium
KDE: Update KDE Gear to 22.04.3
2022-07-07 23:50:27 +02:00
kim-api
science/kim-api: Update 2.2.1 -> 2.3.0
2022-03-19 18:18:45 -07:00
kplib/files
science/kplib: Remove -march=native to fix build on some architectures
2022-07-23 13:26:08 -07:00
kst2
science/kst2: Fix build with newer HDF5 (1.10.8+ or 1.12.1+)
2022-07-14 17:23:36 +03:00
lammps
science/lammps: Fix MPI option; Change VTK option to use VTK-9.1
2022-06-28 10:53:36 -07:00
lamprop
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
latte
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libaec
science/libaec: Update to 1.0.6
2021-09-28 03:48:08 +08:00
libccp4
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libcint
science/libcint: Update 5.1.2 -> 5.1.3
2022-06-16 11:24:43 -07:00
libctl
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libecpint
science/libecpint: Update 1.0.6 -> 1.0.7
2021-12-14 14:41:53 -08:00
libefp
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libgeodecomp
science/libgeodecomp: mark as BROKEN after recent boost upgrade
2022-05-22 23:17:12 +03:00
libgetar
science/libgetar: New port: Library to read and write GEneric Trajectory ARchives
2022-06-27 10:58:02 -07:00
libghemical
science/libghemical: Remove LD_PRELOAD vecause it configured now without it
2021-09-26 10:43:55 -07:00
libgridxc
science/libgridxc: Update 0.8.5 -> 0.9.6
2021-04-23 18:36:22 -07:00
libint
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libint2
science/libint2: Update 2.7.1 -> 2.7.2
2022-06-26 00:20:17 -07:00
libkml
devel/googletest: update to 1.12.1
2022-06-30 15:27:20 +00:00
liblinear
science/liblinear: Update to 2.44
2022-03-31 06:03:39 +08:00
libmbd
science/libmbd: New port: Many-body dispersion library
2022-01-16 21:15:11 -08:00
libmsym
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libnegf
science/libnegf: Update 1.0.3 -> 1.1.2
2022-05-18 13:51:37 -07:00
liboglappth
*: fix tab vs. space issues, and comments according to the guide.
2021-10-16 11:51:39 +02:00
libquantum
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libssm
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
libsvm
*: Clean up some things
2021-10-12 17:01:38 +02:00
libsvm-python
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
libtensorflow1
science/libtensorflow1: disallow newer Bazel
2022-06-12 21:01:13 +01:00
libvdwxc
Regenerate all distfiles using gitlab as source.
2021-04-09 20:44:23 +02:00
libxc
science/libxc: Update 5.1.7 -> 5.2.3
2022-05-24 10:30:13 -07:00
liggghts
science/liggghts: Update 3.8.0-26 -> 3.8.0-45
2022-06-28 09:48:28 -07:00
linux-zotero
science/linux-zotero: Clean up
2021-11-08 00:33:54 +01:00
luscus
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
madness
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
maeparser
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
massxpert
science/massxpert: Improve port
2022-05-19 21:38:15 +02:00
mbdyn
science/mbdyn: fix build on powerpc64*
2021-11-08 15:52:33 +00:00
mcstas
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
mcstas-comps
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
mctc-lib
science/mctc-lib: Update 0.2.5 -> 0.3.0
2022-04-19 20:40:01 -07:00
mcxtrace
*/*: fix trailing whitespace in pkg-descr's
2022-04-01 18:09:49 +03:00
mcxtrace-comps
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
mdynamix
*/*: fix trailing whitespace in pkg-descr's
2022-04-01 18:09:49 +03:00
medit
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
metaphysicl
science/metaphysicl: Update 1.3.2 -> 1.3.3
2021-12-13 09:19:09 -08:00
minc2
science/netcdf: Update to 4.8.1
2022-03-08 02:10:58 +08:00
mmdb2
science/mmdb2: Update 2.0.20 -> 2.0.22
2022-04-30 09:03:26 -07:00
mmtf-cpp
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
mol2ps
lang/fpc: Fix build issues building some fpc based apps
2022-06-20 20:17:20 -05:00
molgif
*/*: Bump port revisons after lang/go{117,118} update
2022-06-07 16:56:10 -05:00
molscript
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
molsketch
science/molsketch: Update 0.7.1 -> 0.7.2
2021-04-07 11:47:02 -07:00
mopac
biology/mopac: Move to science/mopac; Add TIMESTAMP to distinfo; Take maintainership
2022-06-19 00:52:28 -07:00
mpb
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
mpqc
science/mpqc: regen plist after doxygen update (+)
2021-12-16 11:49:52 +03:00
msms
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
2021-10-25 12:58:29 +00:00
mstore
*/*: In 7 ports remove GNU-10.3.0 from install paths
2022-01-18 12:12:05 -08:00
multicharge
science/multicharge: Update 0.1.2 -> 0.2.0
2022-05-05 23:21:10 -07:00
multiwfn
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
namd
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
2021-10-25 12:58:29 +00:00
nest
science/nest: remove redundant USES=compiler
2022-05-31 03:06:02 +00:00
netcdf
science/netcdf: Update to 4.9.0
2022-06-22 04:57:22 +08:00
netcdf-cxx
science/netcdf-cxx: Update MASTER_SITES
2022-03-08 02:10:59 +08:00
netcdf-fortran
science/netcdf-fortran: Update to 4.5.4
2022-03-08 02:10:59 +08:00
nifticlib
*/*: Remove redundant '-[0-9]*' from CONFLICTS
2021-10-29 11:50:18 +02:00
nwchem
science/nwchem: Update 7.0.2.20211110 -> 7.0.2.20220224
2022-02-25 10:19:33 -08:00
nwchem-data
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
octopus
science/octopus: Cosmetic changes
2022-05-31 02:12:09 -07:00
openbabel
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
openems
science/openems: Update 0.0.35-71 -> 0.0.35-76
2022-06-26 14:37:35 -07:00
openkim
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
openkim-models
science/openkim-models: Update 2021-01-28 -> 2021-08-11
2022-05-08 11:02:07 -07:00
openmc
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
openmolcas
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
openmx
science/openmx: Cleanup - remove unnecessary lines
2021-09-05 10:00:44 -07:00
opensim-core
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
opensph
misc/openvdb: Update 9.0.0 -> 9.1.0
2022-06-11 13:29:59 -07:00
opsin
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
orthanc
devel/googletest: update to 1.12.1
2022-06-30 15:27:20 +00:00
orthanc-dicomweb
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
orthanc-mysql
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
orthanc-postgresql
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
orthanc-webviewer
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
p5-Algorithm-SVMLight
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-3DBuilder
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Bond-Find
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Canonicalize
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Elements
science/p5-Chemistry-Elements: Update to 1.075
2021-11-06 03:15:55 +08:00
p5-Chemistry-File-MDLMol
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-Mopac
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-PDB
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SLN
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SMARTS
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SMILES
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-VRML
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-File-XYZ
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-FormulaPattern
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-InternalCoords
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Isotope
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-MacroMol
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-MidasPattern
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Mok
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Mol
science/p5-Chemistry-Mol: Sort PLIST
2021-07-15 00:10:34 +08:00
p5-Chemistry-Pattern
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Reaction
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Chemistry-Ring
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Geo-BUFR
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Geo-Coordinates-Converter
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Geo-Coordinates-Converter-iArea
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Geo-WebService-Elevation-USGS
science/p5-Geo-WebService-Elevation-USGS: Update to 0.120
2021-11-06 03:15:56 +08:00
p5-Mcstas-Tools
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
p5-PerlMol
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
p5-Physics-Unit
*: Return culot@'s ports to the pool (and perl@) after safekeeping his bit.
2021-09-06 23:13:27 +02:00
packmol
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
pagmo2
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
paje
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
paraview
science/paraview: unbreak after the upgrade of science/netcdf
2022-07-05 13:27:25 +02:00
pastix
science/pastix: adding PaStiX, a sparse direct solver
2022-04-23 18:41:10 +02:00
pcmsolver
science/pcmsolver: Remove CMAKE_EXE_LINKER_FLAGS from cmake configure arguments
2022-07-19 01:41:19 -07:00
PETSc
science/PETSc: Update 3.14.1 -> 3.16.3
2022-01-07 00:34:46 -08:00
phonopy
science/phonopy: Update 2.15.0 -> 2.15.1
2022-05-28 21:52:24 -07:00
plumed
science/plumed: Use upsteam release archive
2022-05-23 13:39:54 +02:00
pnetcdf
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
precice
science/precice: Add options; Backport patch provided by upstream
2022-06-21 14:02:33 -07:00
pulseview
all: return bsam's ports to the pool after his commit bit got safekept
2022-06-06 13:19:04 +02:00
py-abipy
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-access
science/py-access: Update to 1.1.8
2022-06-09 18:59:16 +08:00
py-asap3
science/py-asap3: Fix python suffix in shared library name
2022-06-29 01:17:56 -07:00
py-asdf
science/py-asdf: Update to 2.12.0
2022-06-09 18:59:17 +08:00
py-asdf-standard
science/py-asdf-standard: Update to 1.0.2
2022-04-18 07:58:22 +08:00
py-asdf-transform-schemas
science/py-asdf-standard: Update to 1.0.2
2022-04-18 07:58:22 +08:00
py-ase
science/py-ase: Add test target
2022-06-19 03:01:29 -07:00
py-avogadrolibs
science/py-avogadrolibs: Update 1.94.0 -> 1.95.1
2022-02-05 01:44:22 -08:00
py-cdo
science/py-cdo: Update to 1.5.6
2022-01-24 02:50:47 +08:00
py-chainer
devel/protobuf: Update to 3.20.0
2022-04-16 12:19:07 +08:00
py-chainer-chemistry
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-chempy
science/py-chempy: switch to USES=pytest, fix tests and document failing ones
2022-04-26 20:26:11 +03:00
py-cirq-aqt
science/py-cirq-*: Update 0.14.1 -> 0.15.0
2022-07-01 01:44:59 -07:00
py-cirq-core
science/py-cirq-*: Update 0.14.1 -> 0.15.0
2022-07-01 01:44:59 -07:00
py-cirq-google
science/py-cirq-*: Update 0.14.1 -> 0.15.0
2022-07-01 01:44:59 -07:00
py-cirq-ionq
science/py-cirq-*: Update 0.14.1 -> 0.15.0
2022-07-01 01:44:59 -07:00
py-cirq-pasqal
science/py-cirq-*: Update 0.14.1 -> 0.15.0
2022-07-01 01:44:59 -07:00
py-cirq-rigetti
science/py-cirq-rigetti: New port: Cirq module to run on Rigetti quantum computers
2022-07-01 18:55:15 -07:00
py-coards
science/py-coards: Cosmetic change
2021-05-12 05:47:18 +08:00
py-DendroPy
science/py-DendroPy: Update to 4.5.2
2022-06-05 15:43:08 +08:00
py-dipy
science/py-dipy: Update 1.4.1 -> 1.5.0
2022-04-24 12:42:21 -07:00
py-dlib
science/py-dlib: fix build on powerpc64le
2021-04-11 17:08:35 +00:00
py-eccodes
science/py-eccodes: Update to 1.4.2
2022-05-22 12:37:30 +08:00
py-esda
science/py-esda: Add SHAPE option
2021-09-21 11:44:54 +08:00
py-fresnel
math/qhull: Renaming ports
2022-02-18 15:15:30 -06:00
py-geolinks
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-geomet
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-geometer
science/py-geometer: Update to 0.3.4
2022-04-26 23:01:29 +08:00
py-geometric
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-gpaw
science/py-gpaw: Update 21.6.0 -> 22.1.0
2022-01-13 02:25:40 -08:00
py-GPy
science/py-GPy: Broken on systems where OpenMP isn't enabled
2022-07-23 18:19:33 -07:00
py-GPyOpt
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-gsd
science/py-gsd: Update 2.5.1 -> 2.5.2
2022-04-19 18:08:13 -07:00
py-h5json
science/py-h5py: Update to 3.2.1
2021-04-18 13:44:04 +08:00
py-h5py
science/py-h5py: Convert to USE_PYTHON=pytest
2022-06-04 00:57:26 +08:00
py-hiphive
science/py-hiphive: Update 1.0 -> 1.1
2022-05-07 10:11:29 -07:00
py-hoomd-blue
science/py-hoomd-blue: Update 3.1.0 -> 3.2.0
2022-05-19 19:10:19 -07:00
py-inequality
science/py-inequality: Update USES=python
2021-11-06 03:14:23 +08:00
py-jupyter_jsmol
science/py-jupyter_jsmol: switch to USES=pytest, fix testing
2022-04-26 16:45:58 +03:00
py-kim-query
science/py-kim-query: Update 1.1.0 -> 3.0.0
2022-05-08 11:02:07 -07:00
py-kinematics
science/py-kinematics: Update USES=python
2021-11-06 03:14:24 +08:00
py-kliff
science/py-kliff: Update 0.3.3 -> 0.4.0
2022-04-29 12:40:02 -07:00
py-liac-arff
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-libgetar
science/py-libgetar: Fix tests
2022-06-27 15:39:42 -07:00
py-libpysal
science/py-libpysal: Update to 4.6.2
2022-03-25 21:37:13 +08:00
py-lifelines
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-MDAnalysis
science/py-MDAnalysis*: upgrade to 2.2.0
2022-06-21 19:26:21 +02:00
py-MDAnalysisTests
science/py-MDAnalysis*: upgrade to 2.2.0
2022-06-21 19:26:21 +02:00
py-mdp
science/py-mdp: Fix build with setuptools 58.0.0+
2022-03-25 21:38:19 +08:00
py-mmtf-python
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-molmod
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-moltemplate
science/py-moltemplate: Update 2.20.5 -> 2.20.6
2022-07-01 15:41:38 -07:00
py-netCDF4
science/netcdf: Update to 4.8.1
2022-03-08 02:10:58 +08:00
py-netcdf-flattener
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-nibabel
science/py-nibabel: Update 3.2.1 -> 3.2.2
2022-04-24 12:42:19 -07:00
py-nilearn
science/py-nilearn: mark BROKEN
2022-03-23 14:44:26 +03:00
py-obspy
science/py-obspy: Update to 1.3.0
2022-03-14 12:14:38 +08:00
py-oddt
science/py-oddt: Not install tests
2022-03-25 10:28:34 -07:00
py-OpenFermion
science/py-OpenFermion: Update 1.2.0 -> 1.3.0
2021-12-23 17:54:58 -08:00
py-OpenMC
science/{,py-}openmc: Update 0.12.2 -> 0.13.0
2022-05-08 13:55:59 -07:00
py-openpiv
science/py-openpiv: update to 0.23.8
2021-11-06 00:17:44 +03:00
py-paida
science/py-paida: Fix build with setuptools 58.0.0+
2022-03-25 21:38:19 +08:00
py-paramz
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-phono3py
science/py-phono3py: Remove unnecessary build dependency on math/lapacke
2021-06-08 20:32:22 -07:00
py-phonopy
science/py-phonopy: Update 2.14.0 -> 2.15.1
2022-06-05 23:31:07 -07:00
py-PubChemPy
science/py-PubChemPy: New port: Simple Python wrapper around the PubChem PUG REST API
2021-07-27 06:16:51 -07:00
py-pupynere
science/py-pupynere: Update USES=python
2021-11-06 03:14:24 +08:00
py-py3Dmol
science/py-py3Dmol: New port: IPython interface for embedding 3Dmol.js views
2022-06-15 13:56:03 -07:00
py-pyaixi
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-pyberny
science/py-pyberny: New port: Optimizer of molecular geometries with respect to the total energy
2021-10-16 16:56:19 -07:00
py-pycsw
science/py-pycsw: Update to 2.6.1
2021-10-25 23:57:35 +08:00
py-pydicom
science/py-pydicom: Update to 2.3.0
2022-04-07 11:41:06 +00:00
py-PyFR
science/py-PyFR: Update 1.13.0 -> 1.14.0
2022-05-05 23:21:10 -07:00
py-pygeodesy
science/py-pygeodesy: Update to 22.1.22
2022-02-28 20:46:23 +08:00
py-pygeometa
science/py-pygeometa: Update to 0.11.1
2022-06-22 00:36:23 +08:00
py-pygmo2
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
py-pyked
devel/py-pint: Update to 0.19.1
2022-04-18 07:58:18 +08:00
py-pymatgen
science/py-pymatgen: Update 2022.0.17 -> 2022.4.26
2022-05-09 20:50:24 -07:00
py-pymol
textproc/libxml2: bump all LIB_DEPENDS consumers
2022-04-10 15:11:41 -04:00
py-PyNE
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
py-pyosf
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-pyprecice
science/py-pyprecice: New port: Coupling library for partitioned multi-physics simulations
2022-06-20 09:53:12 -07:00
py-pysal
science/py-pysal: Update to 2.6.0
2022-03-08 02:11:26 +08:00
py-pyscf
science/py-pyscf: Unbreak fetch
2022-01-12 20:40:22 -08:00
py-pyteomics
science/py-pyteomics: Update to 4.5.3
2022-03-25 21:37:13 +08:00
py-qcelemental
science/py-qcelemental: Update 0.24.0 -> 0.25.0
2022-06-15 13:56:03 -07:00
py-qcengine
devel/py-pint: Update to 0.19.1
2022-04-18 07:58:18 +08:00
py-qspin
science/py-qspin: Fix build with setuptools 58.0.0+
2022-03-25 21:38:19 +08:00
py-quantities
science/py-quantities: Update 0.12.5 -> 0.13.0
2022-01-14 08:48:13 -08:00
py-rmf
science/{,py-}rmf: Update 1.3.1 -> 1.4
2022-03-11 08:59:47 -08:00
py-rmsd
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-ruffus
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-scikit-fuzzy
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-scikit-learn
cience/py-scikit-learn: Update to 1.1.1
2022-06-13 10:44:37 +08:00
py-scikit-optimize
science/py-scikit-optimize: Update to 0.9.0
2021-10-25 23:57:36 +08:00
py-scikit-sparse
science/py-scikit-sparse: Update 0.4.5 -> 0.4.6
2021-09-13 15:28:57 -07:00
py-scimath
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
py-scipy
science/py-scipy: Update to 1.8.1
2022-05-25 15:46:45 +08:00
py-scoria
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-segregation
science/py-segregation: Update to 2.2.3
2022-04-18 07:58:23 +08:00
py-segyio
science/py-segyio: switch to USES=pytest and fix tests
2022-04-26 16:46:03 +03:00
py-SimpleSpectral
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
py-sklearn-pandas
science/py-sklearn-pandas: Add py-sklearn-pandas 2.2.0
2022-01-29 07:26:35 +08:00
py-skrebate
science/py-skrebate: Update USES=python
2021-11-06 03:14:24 +08:00
py-spaghetti
science/py-spaghetti: Update to 1.6.5
2022-01-24 02:50:48 +08:00
py-spglib
science/{,py-}spglib: Update 1.16.3 -> 1.16.5
2022-05-07 22:27:10 -07:00
py-tensorflow
devel/icu: update to 71.1
2022-04-07 00:39:10 +00:00
py-thewalrus
science/py-thewalrus: New port: Open source library for hafnian calculation
2022-05-31 20:42:38 -07:00
py-tobler
science/py-tobler: Update to 0.9.0
2022-03-08 02:11:26 +08:00
py-trainstation
science/py-trainstation: New port: Convenient training of linear models
2022-03-07 12:14:14 -08:00
py-veusz
devel/py-qt5, devel/py-sip: Update versions
2022-03-07 18:39:13 +01:00
pybrain
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
pynn
science/pynn: Update to 0.10.0
2021-12-17 16:18:50 +08:00
q
science/q: New port: Molecular Dynamics (MD) tools
2022-05-23 18:54:08 -07:00
qbox
science/qbox: Update 1.74.1 -> 1.74.2
2022-03-26 19:40:09 -07:00
qcl
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
qiskit-aer
devel/libfmt: Update to 8.0.0
2021-07-22 02:11:51 +08:00
qmcpack
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
quantum-espresso
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
quantum-espresso-pseudopotentials
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
quantum-jet
science/quantum-jet: New port: Cross-platform header-only library for simulating quantum circuits
2022-05-31 13:02:18 -07:00
qwalk
textproc/libxml2: bump all LIB_DEPENDS consumers
2022-04-10 15:11:41 -04:00
R-cran-AMORE
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-bayesm
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-cmprsk
science/R-cran-cmprsk: Update to 2.2-11
2022-01-09 06:54:19 +00:00
R-cran-DCluster
science/R-cran-DCluster: Update to 0.2-8
2022-06-09 12:51:21 +00:00
R-cran-e1071
science/R-cran-e1071: Update to 1.7-11
2022-06-09 23:10:44 +00:00
R-cran-eco
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-Epi
science/R-cran-Epi: Update to 2.46
2022-04-17 06:22:10 +00:00
R-cran-epicalc
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-etm
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-FAdist
science/R-cran-FAdist: upgrade to 2.4
2022-03-06 21:56:52 +01:00
R-cran-fastICA
science/R-cran-fastICA: Update to 1.2-3
2021-09-25 18:13:13 -04:00
R-cran-kernlab
science/R-cran-kernlab: Update to 0.9-31
2022-06-10 02:05:52 +00:00
R-cran-ks
science/R-cran-ks: adding a R library for Kernel Smoothing
2022-05-06 17:32:19 +02:00
R-cran-snow
science/R-cran-snow: Update to 0.4-4
2021-10-28 10:20:03 +00:00
R-cran-som
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
R-cran-udunits2
science/R-cran-udunits2: Update to 0.13.2.1
2022-03-15 23:22:57 +00:00
rdkit
science/rdkit: Update 2022.03.2 -> 2022.03.3
2022-06-03 00:17:04 -07:00
rmf
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
rubygem-ai4r
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-cdo
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-rgeo
science/rubygem-rgeo: Update to 2.4.0
2022-01-26 03:51:05 +08:00
rubygem-rgeo-geojson
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-rgeo-proj4
science/rubygem-rgeo-proj4: Update to 3.1.1
2021-11-22 02:24:31 +08:00
rubygem-rgeo-shapefile
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-ruby-dcl
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
rubygem-ruby-netcdf
science/rubygem-ruby-netcdf: Update to 0.8.0
2022-03-31 06:21:46 +08:00
scidavis
science/scidavis: tell portscout to ignore old tag
2022-05-10 21:31:45 +03:00
segyio
devel/cmake: Update to 3.23.0
2022-05-16 08:49:43 +02:00
shelxle
science/shelxle: Update 1.0.1395 -> 1.0.1396
2022-06-26 00:20:17 -07:00
siconos
cleanup: drop support for EOL FreeBSD 11.X
2021-09-30 23:23:30 +02:00
siesta
science/siesta: Add comment
2022-06-19 00:44:10 -07:00
sigrok-cli
science/sigrok-cli: Update version 0.7.1=>0.7.2
2022-06-06 16:56:48 -05:00
sigrok-firmware
all: Take maintainership
2022-06-06 06:48:06 -05:00
sigrok-firmware-fx2lafw
all: Take maintainership
2022-06-06 06:48:06 -05:00
sigrok-firmware-utils
all: Take maintainership
2022-06-06 06:48:06 -05:00
silo
science/silo: Fix build with HDF5 1.10.8+
2022-06-16 23:13:02 +08:00
simbody
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
simgrid
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
simint
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
simlib
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
simple-dftd3
science/simple-dftd3: Update 0.5.1 -> 0.6.0
2022-04-30 12:48:30 -07:00
simsmith
all: Remove all other $FreeBSD keywords.
2021-04-06 16:31:13 +02:00
smoldyn
science/smoldyn: Update 2.66 -> 2.67
2021-11-06 16:56:37 -07:00
sparta
science/sparta: Update 20Oct2021 -> 7Jan2022
2022-01-08 01:09:25 -08:00
spglib
science/spglib: fix build without libomp
2022-05-31 03:05:56 +00:00
step
KDE: Update KDE Gear to 22.04.3
2022-07-07 23:50:27 +02:00
svmlight
science/svmlight: fix build on 13.0+
2021-10-29 18:01:10 +00:00
tblite
science/tblite: Broken on systems where OpenMP isn't enabled
2022-07-24 03:25:02 -07:00
teem
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
tfel
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
tfel-edf
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
thermofun
science/thermofun: Update 0.3.8 -> 0.3.9
2022-01-18 10:42:45 -08:00
tinker
science/tinker: don't set -march=native
2022-05-22 00:10:44 +00:00
udunits
Remove # $FreeBSD$ from Makefiles.
2021-04-06 16:31:07 +02:00
ukrmol+
science/ukrmol+: Broken on aarch64
2022-06-03 11:23:35 -07:00
v_sim
science/netcdf: Update to 4.8.1
2022-03-08 02:10:58 +08:00
vipster
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
vmd
science/netcdf: Update to 4.8.1
2022-03-08 02:10:58 +08:00
voro++
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
votca
*/*: Replace science/szip with science/libaec
2022-06-16 23:13:01 +08:00
wannier90
One more small cleanup, forgotten yesterday.
2021-04-07 10:09:01 +02:00
wwplot
math/py-matplotlib: chase minimum Python version in dependent ports
2021-05-10 22:13:20 +02:00
wxmacmolplt
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
xcfun
science/xcfun: fix build on GCC-based systems
2021-06-07 06:38:43 -05:00
xcrysden
framework: Add new USES 'magick' for graphics/ImageMagick*
2021-12-11 14:50:53 +01:00
xdrawchem
graphics/mesa-libs: Bump reverse deps for libglvnd
2021-06-22 11:53:08 -07:00
xtb
science/xtb: Broken on systems where OpenMP isn't enabled
2022-08-04 00:43:35 -07:00
yoda
science/yoda: Update 1.9.4 -> 1.9.6
2022-08-23 20:45:14 -07:00
zotero
devel/libffi: Bump deps PORTREVISION for shlib change
2022-05-09 12:23:51 -07:00
Makefile
science/py-cirq-rigetti: New port: Cirq module to run on Rigetti quantum computers
2022-07-01 18:55:15 -07:00